Bioinformatics and Computational Biology Consulting

From Atoms to Systems

We convert complex biological data into clear scientific answers. Molecular simulations, AI-driven design, and multi-omics analysis — rigorous, reproducible, and built to publish.

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About Us

From Molecules to Microbiomes

Computational bottlenecks should not stall biological discovery. Led by Dr. Bharat Manna, Manna Omics Solutions integrates molecular dynamics, AI-driven structural biology, and genome-resolved multi-omics to decode biological systems across scales — from atomic interactions to ecosystem dynamics. We work with academic research groups and industry teams to deliver rigorous, publication-quality analytics that drive real scientific progress.

Services

What We Do

Specialized computational services spanning molecular, genomic, and systems scales. Built for research groups and industry teams who need rigorous, reproducible, publication-ready outputs.

Research & Computational Services

Molecular Dynamics & AI-Driven Design

From protein–ligand binding to de novo molecular design. We run all-atom and coarse-grained simulations, free energy calculations, and enhanced sampling — combined with AlphaFold, RFdiffusion, and generative AI tools for structure prediction, design, and validation. Every result is reproducible and built for publication.

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(Meta)genomics & Multi-Omics

Comprehensive multi-omics services including 16S/ITS amplicon profiling, whole-genome shotgun sequencing, (meta)transcriptomics, (meta)proteomics, and metabolomics. Core capabilities include genome assembly, MAG reconstruction, taxonomic and functional annotation, metabolic pathway reconstruction, and cross-omics network analysis. Data analyzed individually or integrated for systems-level biological interpretation.

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Resistome & AMR Profiling

Comprehensive antimicrobial resistance gene profiling, mobile genetic element tracking, and resistome dynamics characterization across environmental, clinical, and agricultural samples. Applied within a One Health framework linking microbial ecology to public health.

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Training & Capacity Building

Workshops & Short-term Courses

Method-focused training in metagenomics, molecular simulation, and reproducible bioinformatics workflows for research groups and graduate students moving into computational biology. Delivered as invited workshops and short courses at universities and research labs, remotely or on-site.

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Technical Expertise

Our work is built on established, widely used computational platforms, with reproducibility, scalability, and methodological rigor across every project.

Molecular Simulation Suite

End-to-end MD simulation workflows, from system preparation and force field parameterization to production runs and thermodynamic analysis.

AMBERGROMACSNAMDCHARMMOpenMM PackmolAutoDockCPPTRAJ VMDPyMOLANI-2xDeePMD-kitPLUMED

AI/ML & Structural Biology Suite

State-of-the-art AI tools for protein structure prediction, molecular design, and generative biology pipelines.

AlphaFoldESM-2ProteinMPNNRFdiffusionBoltzGenBoltz-2 REINVENT4DiffDockOpenFE

Genomics & Metagenomics Suite

Genome-resolved metagenomics from raw sequencing data to binning, taxonomy, and functional annotation at population scale.

FastQCTrimmomaticMEGAHITProdigalDIAMOND Bowtie2MaxBin2MetaBAT2CONCOCTCheckM GTDB-TkKraken2MetaPhlAnHUMAnN3 METABOLICmetaGEMbreseqsnippy QIIME2KEGGeggNOGCAZy

Integrated Multi-Omics Suite

Cross-platform integration of metaproteomics, metabolomics, and transcriptomics data for systems-level biological interpretation.

STARSalmonfeatureCountsDESeq2edgeR WGCNADIA-NNMetaboAnalystMS-DIALmixOmics

Resistome & AMR Analytics

Antimicrobial resistance gene detection, mobile genetic element tracking, and horizontal gene transfer analysis across environmental and clinical datasets.

CARD-RGIAMRFinderPlusMetaCHIPResFinder

Computing & Workflow Automation

Scalable, reproducible pipelines built for HPC environments with version-controlled, documented workflows.

RPythonBashLinux SnakemakeNextflowSLURM / HPCGitDocker
Founder
Dr. Bharat Manna

Dr. Bharat Manna

Founder

Dr. Bharat Manna is a computational biologist with a Ph.D. from IIT Kharagpur and postdoctoral training at the University of Auckland, New Zealand. His research sits at the intersection of oxidative stress, microbial ecology, and antimicrobial resistance — an area of growing relevance to global One Health challenges.

His expertise spans two scales: atomistic molecular dynamics simulations of protein systems, and genome-resolved multi-omics analysis of complex environmental microbiomes. This dual fluency — from force fields to metagenomes — is the foundation on which Manna Omics Solutions was built.

Gold Medalist, M.Tech Bioinformatics. Winner, SAMHAR-COVID19 Hackathon (C-DAC, DST, NVIDIA).

Google Scholar ORCID ResearchGate LinkedIn
Get in Touch

Let's Work Together

Tell us about your project and we'll respond with a scope outline and suggested next steps within 48 hours.

or
  info@mannaomics.com

  Kolkata, India

  Remote consulting worldwide

  Response within 48 hours

Academic collaborations, industry projects, and grant-linked consulting — all enquiries welcome.